Besa Fhir Help File

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Class TMolecularSequenceStartingSequence

Description
Hierarchy
Fields
Methods
Properties

Unit

bsFhir_r5

Declaration

type TMolecularSequenceStartingSequence = class(TBackboneElement)

Description

Representation of a molecular sequence.

Hierarchy

Overview

Methods

Public constructor Create; override;

Properties

Public property genomeAssembly : TCodeableConcept read GetgenomeAssembly write SetgenomeAssembly;
Public property chromosome : TCodeableConcept read Getchromosome write Setchromosome;
Public property sequenceCodeableConcept : TCodeableConcept read GetsequenceCodeableConcept write SetsequenceCodeableConcept;
Public property sequenceString : string read GetsequenceString write SetsequenceString;
Public property sequenceStringElement : Tstring read GetsequenceStringElement write SetsequenceStringElement;
Public property sequenceReference : TReference read GetsequenceReference write SetsequenceReference;
Public property windowStart : integer read GetwindowStart write SetwindowStart;
Public property windowStartElement : Tinteger read GetwindowStartElement write SetwindowStartElement;
Public property windowEnd : integer read GetwindowEnd write SetwindowEnd;
Public property windowEndElement : Tinteger read GetwindowEndElement write SetwindowEndElement;
Public property orientation : string read Getorientation write Setorientation;
Public property orientationElement : TOrientationType read GetorientationElement write SetorientationElement;
Public property strand : string read Getstrand write Setstrand;
Public property strandElement : TStrandType read GetstrandElement write SetstrandElement;

Description

Methods

Public constructor Create; override;
 

Properties

Public property genomeAssembly : TCodeableConcept read GetgenomeAssembly write SetgenomeAssembly;

The genome assembly used for starting sequence, e.g. GRCh38.

Public property chromosome : TCodeableConcept read Getchromosome write Setchromosome;

Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).

Public property sequenceCodeableConcept : TCodeableConcept read GetsequenceCodeableConcept write SetsequenceCodeableConcept;

The reference sequence that represents the starting sequence. (choose any one of sequence*, but only one)

Public property sequenceString : string read GetsequenceString write SetsequenceString;

The reference sequence that represents the starting sequence. (choose any one of sequence*, but only one)

Public property sequenceStringElement : Tstring read GetsequenceStringElement write SetsequenceStringElement;
 
Public property sequenceReference : TReference read GetsequenceReference write SetsequenceReference;

The reference sequence that represents the starting sequence. (choose any one of sequence*, but only one)

Public property windowStart : integer read GetwindowStart write SetwindowStart;

Start position of the window on the starting sequence. This value should honor the rules of the coordinateSystem.

Public property windowStartElement : Tinteger read GetwindowStartElement write SetwindowStartElement;
 
Public property windowEnd : integer read GetwindowEnd write SetwindowEnd;

End position of the window on the starting sequence. This value should honor the rules of the coordinateSystem.

Public property windowEndElement : Tinteger read GetwindowEndElement write SetwindowEndElement;
 
Public property orientation : string read Getorientation write Setorientation;

A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.

Public property orientationElement : TOrientationType read GetorientationElement write SetorientationElement;
 
Public property strand : string read Getstrand write Setstrand;

An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.

Public property strandElement : TStrandType read GetstrandElement write SetstrandElement;
 
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