Besa Fhir Help File

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Class TGenomicStudyAnalysis

Description
Hierarchy
Fields
Methods
Properties

Unit

bsFhir_r5

Declaration

type TGenomicStudyAnalysis = class(TBackboneElement)

Description

A GenomicStudy is a set of analyses performed to analyze and generate genomic data.

Hierarchy

Overview

Methods

Public constructor Create; override;

Properties

Public property identifier : TIdentifierArray read GetidentifierArray;
Public property methodType : TCodeableConceptArray read GetmethodTypeArray;
Public property changeType : TCodeableConceptArray read GetchangeTypeArray;
Public property genomeBuild : TCodeableConcept read GetgenomeBuild write SetgenomeBuild;
Public property instantiatesCanonical : string read GetinstantiatesCanonical write SetinstantiatesCanonical;
Public property instantiatesCanonicalElement : Tcanonical read GetinstantiatesCanonicalElement write SetinstantiatesCanonicalElement;
Public property instantiatesUri : string read GetinstantiatesUri write SetinstantiatesUri;
Public property instantiatesUriElement : Turi read GetinstantiatesUriElement write SetinstantiatesUriElement;
Public property title : string read Gettitle write Settitle;
Public property titleElement : Tstring read GettitleElement write SettitleElement;
Public property focus : TReferenceArray read GetfocusArray;
Public property specimen : TReferenceArray read GetspecimenArray;
Public property date_ : string read Getdate_ write Setdate_;
Public property date_Element : TdateTime_ read Getdate_Element write Setdate_Element;
Public property note : TAnnotationArray read GetnoteArray;
Public property protocolPerformed : TReference read GetprotocolPerformed write SetprotocolPerformed;
Public property regionsStudied : TReferenceArray read GetregionsStudiedArray;
Public property regionsCalled : TReferenceArray read GetregionsCalledArray;
Public property input : TGenomicStudyInputArray read GetinputArray;
Public property output : TGenomicStudyOutputArray read GetoutputArray;
Public property performer : TGenomicStudyPerformerArray read GetperformerArray;
Public property device : TGenomicStudyDeviceArray read GetdeviceArray;

Description

Methods

Public constructor Create; override;
 

Properties

Public property identifier : TIdentifierArray read GetidentifierArray;

Identifiers for the analysis event.

Public property methodType : TCodeableConceptArray read GetmethodTypeArray;

Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).

Public property changeType : TCodeableConceptArray read GetchangeTypeArray;

Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.

Public property genomeBuild : TCodeableConcept read GetgenomeBuild write SetgenomeBuild;

The reference genome build that is used in this analysis.

Public property instantiatesCanonical : string read GetinstantiatesCanonical write SetinstantiatesCanonical;

The defined protocol that describes the analysis.

Public property instantiatesCanonicalElement : Tcanonical read GetinstantiatesCanonicalElement write SetinstantiatesCanonicalElement;
 
Public property instantiatesUri : string read GetinstantiatesUri write SetinstantiatesUri;

The URL pointing to an externally maintained protocol that describes the analysis.

Public property instantiatesUriElement : Turi read GetinstantiatesUriElement write SetinstantiatesUriElement;
 
Public property title : string read Gettitle write Settitle;

Name of the analysis event (human friendly).

Public property titleElement : Tstring read GettitleElement write SettitleElement;
 
Public property focus : TReferenceArray read GetfocusArray;

The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.

Public property specimen : TReferenceArray read GetspecimenArray;

The specimen used in the analysis event.

Public property date_ : string read Getdate_ write Setdate_;

The date of the analysis event.

Public property date_Element : TdateTime_ read Getdate_Element write Setdate_Element;
 
Public property note : TAnnotationArray read GetnoteArray;

Any notes capture with the analysis event.

Public property protocolPerformed : TReference read GetprotocolPerformed write SetprotocolPerformed;

The protocol that was performed for the analysis event.

Public property regionsStudied : TReferenceArray read GetregionsStudiedArray;

The genomic regions to be studied in the analysis (BED file).

Public property regionsCalled : TReferenceArray read GetregionsCalledArray;

Genomic regions actually called in the analysis event (BED file).

Public property input : TGenomicStudyInputArray read GetinputArray;

Inputs for the analysis event.

Public property output : TGenomicStudyOutputArray read GetoutputArray;

Outputs for the analysis event.

Public property performer : TGenomicStudyPerformerArray read GetperformerArray;

Performer for the analysis event.

Public property device : TGenomicStudyDeviceArray read GetdeviceArray;

Devices used for the analysis (e.g., instruments, software), with settings and parameters.

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