Class TMolecularSequenceReferenceSeq
Unit
bsFhir_r4b
Declaration
type TMolecularSequenceReferenceSeq = class(TBackboneElement)
Description
Raw data describing a biological sequence.
Hierarchy
Overview
Methods
Properties
Description
Methods
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constructor Create; override; |
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Properties
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property genomeBuild : string read GetgenomeBuild write SetgenomeBuild; |
The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
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property genomeBuildElement : Tstring read GetgenomeBuildElement write SetgenomeBuildElement; |
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property orientation : string read Getorientation write Setorientation; |
A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.
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property orientationElement : TorientationType read GetorientationElement write SetorientationElement; |
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property referenceSeqId : TCodeableConcept read GetreferenceSeqId write SetreferenceSeqId; |
Reference identifier of reference sequence submitted to NCBI. It must match the type in the MolecularSequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
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property referenceSeqPointer : TReference read GetreferenceSeqPointer write SetreferenceSeqPointer; |
A pointer to another MolecularSequence entity as reference sequence.
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property referenceSeqString : string read GetreferenceSeqString write SetreferenceSeqString; |
A string like "ACGT".
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property referenceSeqStringElement : Tstring read GetreferenceSeqStringElement write SetreferenceSeqStringElement; |
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property strand : string read Getstrand write Setstrand; |
An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.
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property strandElement : TstrandType read GetstrandElement write SetstrandElement; |
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property windowStart : integer read GetwindowStart write SetwindowStart; |
Start position of the window on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
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property windowStartElement : Tinteger read GetwindowStartElement write SetwindowStartElement; |
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property windowEnd : integer read GetwindowEnd write SetwindowEnd; |
End position of the window on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
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property windowEndElement : Tinteger read GetwindowEndElement write SetwindowEndElement; |
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